PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056405-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 465aa    MW: 52745.4 Da    PI: 5.3576
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056405-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.2e-111796546
                      -HHHHHHHHHHHHHTTTT.......................................-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  5 TteEdellvdavkqlGgg.......................................tWktIartmgkgRtlkqcksrwqk 46
                      +++E++ +++++  +G++                                       +W+ Ia++m+ gRt++ +k++w++
  PSME_00056405-RA 17 SPQEEQSIIHLHSIFGNRfsflsipaalldynsliiivhinryslsfdlwnewhqrrRWSQIAAHMP-GRTDNYIKNYWNT 96
                      89*****************************************************************.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-18331IPR009057Homeodomain-like
PROSITE profilePS500906.98898IPR017877Myb-like domain
SMARTSM007171.1E-612100IPR001005SANT/Myb domain
CDDcd001676.80E-67096No hitNo description
SuperFamilySSF466894.29E-770104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-1871103IPR009057Homeodomain-like
PfamPF002491.2E-57396IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MRWVNYLRPG LKNSDISPQE EQSIIHLHSI FGNRFSFLSI PAALLDYNSL IIIVHINRYS  60
LSFDLWNEWH QRRRWSQIAA HMPGRTDNYI KNYWNTCIKR KLKLKQRLLV SSSTEGTSNN  120
NNNTNLIIPS QSDHTNKTNY SVSARDHDPS TSFHHSAKGW GAMPEERLQS LNNIFNVVTT  180
AENQHNLVHD GLGLKHEQVQ EHEELGLKHE QVQERSIEFV STDVGPTNNS LISCSPLWIE  240
STSSDSHKNE SFSQVFTYPT SLEVQGHTYQ TAKSLECDQL DVDSWTTLAP HEAHASANTT  300
LSTIPALVEI NNSLKGKIEN DVHIIDENEN EMIIDHLLFT SSFDFSNVYP NAADFCNVFP  360
GLESYPPHNS SSQIHAPEIL WDDLDQYLKI HSQDQYDGKD LGNLTYDEVK FGAPTYITID  420
RQKSSQSPPI IGVMVDNQQQ CSGIPNEEPK TTEVPTSLGS KTLEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-15myb domain protein 46